Hemk Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hemk Protein
  Conformer 1
(PDB)
1sg9 (C)
  Conformer 2
(PDB)
1nv8 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 194 0.45   81 - 207   213 - 279
2 69 0.64   15 - 80   208 - 212

Sequence


           _______________________________________________________________________80_______________________________________________ 
 1sg9(C) : SGAERKIWSLIRDCSGKLEGVTETSVLEVLLIVSRVLGIRKEDLFLKDLGVSPTEEKRILELVEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVAD 
         :                                                                                                                          
 1nv8(B) : *****KIWSLIRDCSGKLEGVTETSVLEVLLIVSRVLGIRKEDLFL--lGVSPTEEKRILELVEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVAD 
           _______________________________________________________________________80_______________________________________________ 

           ___________________________________________________________________________205___211____________________________________ 
 1sg9(C) : IGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 
         :                                                                                                                          
 1nv8(B) : IGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 
           ___________________________________________________________________________205___211____________________________________ 

           __________________________________                                                                                       
 1sg9(C) : GEDQVEELKKIVSDTVFLKDSAGKYRFLLLNRRS                                                                                       
         :                                                                                                                          
 1nv8(B) : GEDQVEELKKIVSDTVFLKDSAGKYRFLLLNRRS                                                                                       
           __________________________________                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.1
Translation
(A)
-0.3
Closure
(%)
97.1
Bending Residues
( green )
  80 - 84
  205 - 208
  211 - 217
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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