Immunoglobulin, Diels Alder Catalytic Antibody

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Immunoglobulin, Diels Alder Catalytic Antibody
  Conformer 1
(PDB) 		1a4j (A)
  Conformer 2
(PDB) 		1mre (L)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 108 0.49   3 - 110
2 105 0.7   111 - 215

Sequence


           __________________________________________________________________________________________________________109___________ 
 1a4j(A) : ELVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPPTFGGGTKLEIKRTVAAPSV 
         :                                                                                                                          
 1mre(L) : DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPRTFGGGTKLEIKRADAAPTV 
           __________________________________________________________________________________________________________104___________ 

           __________________________________________________________________________________________________                       
 1a4j(A) : FIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG*                       
         :                                                                                                                          
 1mre(L) : SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGKERQNGVLNSWTDQNSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE                       
           __________________________________________________________________________________________________                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		45.2
Translation
(A) 		0.2
Closure
(%) 		89.3
Bending Residues
( green ) 		  109 - 111
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: missing

PyMOL Script

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