Meso-Diaminopimelate D-Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Meso-Diaminopimelate D-Dehydrogenase
  Conformer 1
(PDB) 		1f06 (B)
  Conformer 2
(PDB) 		2dap  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 213 0.55   504 - 639   682 - 683   742 - 744   747 - 818
2 102 0.48   640 - 681   684 - 741   745 - 746

Sequence


           ________________________________________________________________________________________________________________________ 
 1f06(B) : MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGWD 
         :                                                                                                                          
 2dap    : MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGWD 
           ________________________________________________________________________________________________________________________ 

           ________________639______________________________________680__________________________________________________________74 
 1f06(B) : PGMFSINRVYAAAVLAEHQQHTFWGPGLSQGHSDALRRIPGVQKAVQYTLPSEDALEKARRGEAGDLTGKQTHKRQCFVVADAADHERIENDIRTMPDYFVGYEVEVNFIDEATFDSEHT 
         :                                                                                                                          
 2dap    : PGMFSINRVYAAAVLAEHQQHTFWGPGLSQGHSDALRRIPGVQKAVQYTLPSEDALEKARRGEAGDLTGKQTHKRQCFVVADAADHERIENDIRTMPDYFVGYEVEVNFIDEATFDSEHT 
           ________________139______________________________________180__________________________________________________________24 

           1_______________________________________________________________________________                                         
 1f06(B) : GMPHGGHVITTGDTGGFNHTVEYILKLDRNPDFTASSQIAFGRAAHRMKQQGQSGAFTVLEVAPYLLSPENLDDLIARDV                                         
         :                                                                                                                          
 2dap    : GMPHGGHVITTGDTGGFNHTVEYILKLDRNPDFTASSQIAFGRAAHRMKQQGQSGAFTVLEVAPYLLSPENLDDLIARDV                                         
           1_______________________________________________________________________________                                         

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.7
Translation
(A) 		-0.6
Closure
(%) 		95.5
Bending Residues
( green ) 		  639 - 640
  680 - 684
  741 - 742
  744 - 747
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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