Abc Transporter, Substrate Binding Protein (Polyamine)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Abc Transporter, Substrate Binding Protein (Polyamine)
  Conformer 1
(PDB) 		4eq7 (A)
  Conformer 2
(PDB) 		4euo (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 152 0.84   122 - 246   306 - 334
2 150 0.93   26 - 121   247 - 305

Sequence


           ________________________________________________________________________________________________121_____________________ 
 4eq7(A) : NDLVFSSWGGTTQDAQKAAWAEKF-vETGINVLQDGPTDYGKLKA-vEANGVTWDVVDVEGDYAAQAGPKGLLEKLDFSVIDKTKLDPRFVTDYSVGSFYYSFVIGCNVDSVSACPKSWA 
         :                                                                                                                          
 4euo(A) : *DLVFSSWGGTTQDAQKAAWAEKFMVETGINVLQDGPTDYGKLKAMVEANGVTWDVVDVEGDYAAQAGPKGLLEKLDFSVIDKTKLDPRFVTDYSVGSFYYSFVIGCNVDSVSACPKSWA 
           ________________________________________________________________________________________________121_____________________ 

           _____________________________________________________________________________________________________246________________ 
 4eq7(A) : DLFDTAKFPGKRTFYKWSAPGVIEAALLADGVTADKLYPLDLDRAFKKLDTIKSDIIWWSGGAQSQQLIASAEAPFGSVWNGR-tALEQSGVKVETSWAQNITAADSLVVPKGTKNKDAA 
         :                                                                                                                          
 4euo(A) : DLFDTAKFPGKRTFYKWSAPGVIEAALLADGVTADKLYPLDLDRAFKKLDTIKSDIIWWSGGAQSQQLIASAEAPFGSVWNGRMTALEQSGVKVETSWAQNITAADSLVVPKGTKNKDAA 
           _____________________________________________________________________________________________________246________________ 

           ________________________________________305_____________________________________                                         
 4eq7(A) : -kFIALATSAQAQAD-aTATGYAPVNIESAKL-dPKIAKSLPDQQTESQVNAD-nYWAQHRDEIGERWYAWQAKHHHHHH                                         
         :                                                                                                                          
 4euo(A) : MKFIALATSAQAQADMATATGYAPVNIESAKLMDPKIAKSLPDQQTESQVNADMNYWAQHRDEIGERWYAWQAK******                                         
           ________________________________________305_____________________________________                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		19.9
Translation
(A) 		0.6
Closure
(%) 		57.4
Bending Residues
( green ) 		  121 - 124
  246 - 247
  305 - 310
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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