Actin-Like Protein 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin-Like Protein 3
  Conformer 1
(PDB)
2p9l (A)
  Conformer 2
(PDB)
2p9u (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 204 0.35   6 - 148   152 - 152   155 - 164   178 - 178   188 - 190   305 - 317   329 - 333   367 - 372   381 - 414
2 189 0.47   149 - 151   153 - 154   165 - 177   179 - 187   191 - 304   318 - 328   334 - 366   373 - 380

Sequence


           ________________________________________________________________________________________________________________________ 
 2p9l(A) : AGRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKEvMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFE 
         :                                                                                                                          
 2p9u(A) : *GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKEvMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFE 
           ________________________________________________________________________________________________________________________ 

           _____________148____________164__________177_______187__________________________________________________________________ 
 2p9l(A) : SFNVPGLYIAVQAVLALAASWTSqVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWI 
         :                                                                                                                          
 2p9u(A) : SFNVPGLYIAVQAVLALAASWTSqVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWI 
           _____________148____________164__________177_______187__________________________________________________________________ 

           ________________________________________________304__________317______326____333__________________________366__371______ 
 2p9l(A) : KQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSkPKPIDVQVITHHMQRYAV 
         :                                                                                                                          
 2p9u(A) : KQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSkPKPIDVQVITHHMQRYAV 
           ________________________________________________304__________317______326____333__________________________366__371______ 

           380____________________________________                                                                                  
 2p9l(A) : WFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGV                                                                                  
         :                                                                                                                          
 2p9u(A) : WFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGV                                                                                  
           380____________________________________                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.6
Translation
(A)
0.0
Closure
(%)
46.2
Bending Residues
( green )
  148 - 149
  151 - 155
  164 - 165
  177 - 179
  187 - 188
  190 - 191
  304 - 305
  317 - 318
  326 - 331
  333 - 334
  366 - 367
  371 - 373
  380 - 381
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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