Actin-Related Protein 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin-Related Protein 3
  Conformer 1
(PDB)
1k8k (A)
  Conformer 2
(PDB)
2p9p (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 230 0.99   15 - 15   33 - 33   77 - 82   113 - 118   146 - 371   373 - 373   375 - 375
2 154 0.26   5 - 14   16 - 32   34 - 76   83 - 112   119 - 145   372 - 372   374 - 374   376 - 412

Sequence


           __________14________________32_______________________________76____82___________________________112___118_______________ 
 1k8k(A) : GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKEvMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFES 
         :                                                                                                                          
 2p9p(A) : GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKE-mKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFES 
           __________14________________32_______________________________76____82___________________________112___118_______________ 

           _______143______________________________________________________________________________________________________________ 
 1k8k(A) : FNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWI 
         :                                                                                                                          
 2p9p(A) : FNVPGLYIAVQAVLALAASWTSr-----TLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDG-kWI 
           _______143______________________________________________________________________________________________________________ 

           _______________________________________________________________________________________________________________371______ 
 1k8k(A) : KQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSkPKPIDVQVITHHMQRYAV 
         :                                                                                                                          
 2p9p(A) : KQYTGINA--kKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSkPKPIDVQVITHHMQRYAV 
           _______________________________________________________________________________________________________________371______ 

           _________________________________________                                                                                
 1k8k(A) : WFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGVMS                                                                                
         :                                                                                                                          
 2p9p(A) : WFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVF****                                                                                
           _________________________________________                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.3
Translation
(A)
0.3
Closure
(%)
95.2
Bending Residues
( green )
  14 - 16
  32 - 34
  76 - 77
  82 - 83
  112 - 113
  118 - 119
  143 - 146
  371 - 376
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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