Actin, Cytoplasmic 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin, Cytoplasmic 1
  Conformer 1
(PDB)
3u4l (A)
  Conformer 2
(PDB)
3chw (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 290 0.51   12 - 188   208 - 224   256 - 369
2 28 1.06   189 - 207   242 - 250

Sequence


           ________________________________________________________________________________________________________________________ 
 3u4l(A) : *AALVVDNGSGMCKAGFAGDDAPRAVFPSIVG----dSYVGDEAQSKRGI---kYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYV 
         :                                                                                                                          
 3chw(A) : VQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHdSYVGDEAQSKRGILTLKYPIE-gIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYV 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________186_________________206_________218_____________________________250____ 
 3u4l(A) : AIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 
         :                                                                                                                          
 3chw(A) : AIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNER 
           _________________________________________________186_________________206_________218_____________________________250____ 

           ________________________________________________________________________________________________________________________ 
 3u4l(A) : FRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKC 
         :                                                                                                                          
 3chw(A) : FRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKC 
           ________________________________________________________________________________________________________________________ 

           _                                                                                                                        
 3u4l(A) : F                                                                                                                        
         :                                                                                                                          
 3chw(A) : F                                                                                                                        
           _                                                                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.8
Translation
(A)
-0.9
Closure
(%)
73.5
Bending Residues
( green )
  186 - 189
  206 - 213
  218 - 242
  250 - 256
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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