Adp-Dependent Glucokinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adp-Dependent Glucokinase
  Conformer 1
(PDB)
4b8s (A)
  Conformer 2
(PDB)
1gc5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 355 0.44   4 - 40   113 - 113   116 - 183   213 - 441   446 - 465
2 107 0.66   41 - 112   114 - 115   184 - 212   442 - 445

Sequence


           ______________________________________40_____________________________________________________________________112________ 
 4b8s(A) : *KESLKDRIRLWKRLYVNAFENALNAIPNVKGVLLAYNTNIDAIKYLDKDDLEKRVTEIGKEKVFEIIENPPEKISSIEELLGGILRSIKLGKAMEWFVESEEVRRYLREWGWDELRIGG 
         :                                                                                                                          
 1gc5(A) : MKESLKDRIRLWKRLYVNAFENALNAIPNVKGVLLAYNTNIDAIKYLDADDLEKRVTEKGKEKVFEIIENPPEKISSIEELLGGILRSIKLGKAMEWFVESEEVRRYLREWGWDELRIGG 
           ______________________________________40_____________________________________________________________________112________ 

           ____________________________________________________________183__________________________212____________________________ 
 4b8s(A) : QAGIMANLLGGVYRIPTIVHVPQNPKLQAELFVDGPIYVPVFEGNKLKLVHPKDAIAEEEELIHYIYEFPRGFQVFDVQAPRENRFIANADDYNARVYMRREFREGFEEITRNVELAIIS 
         :                                                                                                                          
 1gc5(A) : QAGIMANLLGGVYRIPTIVHVPQNPKLQAELFVDGPIYVPVFEGNKLKLVHPKDAIAEEEELIHYIYEFPRGFQVFDVQAPRENRFIANADDYNARVYMRREFREGFEEITRNVELAIIS 
           ____________________________________________________________183__________________________212____________________________ 

           ________________________________________________________________________________________________________________________ 
 4b8s(A) : GLQVLKEYYPDGTTYRDVLDRVESHLNILNRYNVKSHFEFAYTANRRVREALVELLPKFTSVGLNEVELASIMEIIGDEELAKEVLEGHIFSVIDAMNVLMDETGIERIHFHTYGYYLAL 
         :                                                                                                                          
 1gc5(A) : GLQVLKEYYPDGTTYKDVLDRVESHLNILNRYNVKSHFEFAYTANRRVREALVELLPKFTSVGLNEVELASIMEIIGDEELAKEVLEGHIFSVIDAMNVLMDETGIERIHFHTYGYYLAL 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________440___________________________              
 4b8s(A) : TQYRGEEVRDALLFASLAAAAKAMKGNLERIEQIRDALSVPTNERAIVLEEELEKEFTEFENGLIDMVDRQLAFVPTKIVASPKSTVGIGDTISSSAFVSEFGMRKR              
         :                                                                                                                          
 1gc5(A) : TQYRGEEVRDALLFASLAAAAKAMKGNLERIEQIRDALSVPTNERAIVLEEELEKEFTEFENGLIDMVDRQLAFVPTKIVASPKSTVGIGDTISSSAFVSEFGMRKR              
           _____________________________________________________________________________440___________________________              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.0
Translation
(A)
0.4
Closure
(%)
99.9
Bending Residues
( green )
  40 - 41
  112 - 117
  183 - 184
  212 - 213
  440 - 446
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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