Alcohol Dehydrogenase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alcohol Dehydrogenase 1
  Conformer 1
(PDB) 		2hcy (A)
  Conformer 2
(PDB) 		2hcy (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 187 1.06   3 - 104   110 - 136   138 - 152   267 - 273   296 - 299   314 - 345
2 156 0.8   105 - 109   137 - 137   153 - 266   274 - 295   300 - 313

Sequence


           _____________________________________________________________________________________________________104__109___________ 
 2hcy(A) : SIPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYT 
         :                                                                                                                          
 2hcy(B) : SIPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYT 
           _____________________________________________________________________________________________________104__109___________ 

           _____________136_____________152________________________________________________________________________________________ 
 2hcy(A) : HDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAH 
         :                                                                                                                          
 2hcy(B) : HDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAH 
           _____________136_____________152________________________________________________________________________________________ 

           _______________________266_270______________________295_299__________312___________________________________              
 2hcy(A) : GVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVGNRADTREALDFFARGLVKSPIKVVGLSTLPEIYEKMEKGQIVGRYVVDTSK              
         :                                                                                                                          
 2hcy(B) : GVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVGNRADTREALDFFARGLVKSPIKVVGLSTLPEIYEKMEKGQIVGRYVVDTSK              
           _______________________266_270______________________295_299__________312___________________________________              

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.0
Translation
(A) 		-0.4
Closure
(%) 		96.2
Bending Residues
( green ) 		  104 - 105
  109 - 111
  136 - 138
  152 - 153
  266 - 267
  270 - 274
  295 - 296
  299 - 300
  312 - 314
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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