Amino Acid Abc Transporter, Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Amino Acid Abc Transporter, Binding Protein
  Conformer 1
(PDB)
3vv5 (A)
  Conformer 2
(PDB)
3vve (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 208 0.3   14 - 55   60 - 64   74 - 234
2 25 0.3   2 - 13   56 - 59   65 - 73

Sequence


           ______________11__________________________________________55__59___64_______73__________________________________________ 
 3vv5(A) : ****FQVRSFEEIKRSGEIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGLKPRWIAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVSRKGGPRTAKDL 
         :                                                                                                                          
 3vve(A) : GGSEFQVRSFEEIKRSGEIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGLKPRWIAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVSRKGGPRTAKDL 
           ______________11__________________________________________55__59___64_______73__________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3vv5(A) : QGKVVGVQVGTTYMEAAQKIPGIKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVGELVFQERVAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGEDVRC 
         :                                                                                                                          
 3vve(A) : QGKVVGVQVGTTYMEAAQKIPGIKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVGELVFQERVAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGEDVRC 
           ________________________________________________________________________________________________________________________ 

           _                                                                                                                        
 3vv5(A) : K                                                                                                                        
         :                                                                                                                          
 3vve(A) : K                                                                                                                        
           _                                                                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.5
Translation
(A)
0.0
Closure
(%)
4.6
Bending Residues
( green )
  11 - 14
  55 - 56
  59 - 60
  64 - 65
  73 - 74
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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