Ancestral Protein Cdt-Anc1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ancestral Protein Cdt-Anc1
  Conformer 1
(PDB)
5tuj (C)
  Conformer 2
(PDB)
5t0w (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 130 0.47   16 - 108   208 - 244
2 95 0.92   109 - 207

Sequence


           ____________________________________________________________________________________________108_________________________ 
 5tuj(C) : STLDEIMKRGTLRVGTDADYKPFSFKDKNGQYTGFDIDLAKALAKELGVKVEFVPTTWDGIIPALQTGKFDIVMSGMTITPERKKKVDFSDPYMTAGQTILVKKDNADKIKSFEDLNKPD 
         :                                                                                                                          
 5t0w(A) : STLDEIMKRGTLRVGTDADYKPFSFKDKNGQYTGFDIDLAKALAKELGVKVEFVPTTWDGIIPALQTGKFDIVMSGMTITPERKKKVDFSDPYMTAGQTILVKKDNADKIKSFEDLNKPD 
           ____________________________________________________________________________________________108_________________________ 

           ________________________________________________________________204__________________________________________            
 5tuj(C) : VKVAVQLGTTSEQAAKEFLPKAKIRTFENNAEAFQEVVSGRADAMVTDSPVAAYYAKlAVVVVDEPFTHEPLGFAIRKGDPELLNWVNNWLKQMKKDGTYDKLYEKWFK            
         :                                                                                                                          
 5t0w(A) : VKVAVQLGTTSEQAAKEFLPKAKIRTFENNAEAFQEVVSGRADAMVTDSPVAAYYAKlAVVVVDEPFTHEPLGFAIRKGDPELLNWVNNWLKQMKKDGTYDKLYEKWFK            
           ________________________________________________________________204__________________________________________            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
33.1
Translation
(A)
-0.4
Closure
(%)
92.5
Bending Residues
( green )
  108 - 109
  204 - 210
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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