Arginine Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Arginine Kinase
  Conformer 1
(PDB)
3m10 (A)
  Conformer 2
(PDB)
5j99 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 123 1.9   99 - 127   157 - 164   172 - 186   212 - 219   230 - 252   256 - 257   277 - 288   330 - 355
2 188 1.2   4 - 98   128 - 156   165 - 171   187 - 211   220 - 229   253 - 255   258 - 276
3 32 1.47   289 - 329

Sequence


           _______________________________________________________________________________________________98_______________________ 
 3m10(A) : VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFII 
         :                                                                                                                          
 5j99(A) : VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFII 
           _______________________________________________________________________________________________98_______________________ 

           ___127__________________________156_____164____171_175________________________________210______219_______229____________ 
 3m10(A) : STRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKT 
         :                                                                                                                          
 5j99(A) : STRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKT 
           ___127__________________________156_____164____171_175________________________________210______219_______229____________ 

           ________252_____________________276_________288______________________________________329____________________________     
 3m10(A) : VYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRG---------gGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA     
         :                                                                                                                          
 5j99(A) : VYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA     
           ________252_____________________276_________288______________________________________329____________________________     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.0
Translation
(A)
0.1
Closure
(%)
98.3
Bending Residues
( green )
  98 - 99
  127 - 128
  156 - 157
  164 - 165
  171 - 173
  175 - 187
  210 - 212
  219 - 220
  229 - 230
  252 - 258
  276 - 277
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
27.3
Translation
(A)
0.5
Closure
(%)
99.9
Bending Residues
( green )
  288 - 289
  329 - 330
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download