Aspartate Aminotransferase (E.C.2.6.1.1)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartate Aminotransferase (E.C.2.6.1.1)
  Conformer 1
(PDB)
1ase  
  Conformer 2
(PDB)
1ars  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 290 0.35   48 - 333   357 - 360
2 92 0.82   25 - 47   334 - 356   361 - 406

Sequence


           _________________________________47_____________________________________________________________________________________ 
 1ase    : MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSV 
         :                                                                                                                          
 1ars    : MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSV 
           _________________________________39_____________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ase    : KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV 
         :                                                                                                                          
 1ars    : KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________333____________________356________________ 
 1ase    : ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLR 
         :                                                                                                                          
 1ars    : ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLR 
           ______________________________________________________________________________333____________________356________________ 

           ____________________________________                                                                                     
 1ase    : LREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL                                                                                     
         :                                                                                                                          
 1ars    : LREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL                                                                                     
           ____________________________________                                                                                     

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.5
Translation
(A)
-0.4
Closure
(%)
99.9
Bending Residues
( green )
  47 - 48
  333 - 334
  356 - 363
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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