Asp/glu-Specific Dipeptidyl-Peptidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Asp/glu-Specific Dipeptidyl-Peptidase
  Conformer 1
(PDB)
5jxk (A)
  Conformer 2
(PDB)
5jwi (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 490 0.63   24 - 294   337 - 385   542 - 715
2 179 1.5   295 - 336   386 - 541

Sequence


           ________________________________________________________________________________________________________________________ 
 5jxk(A) : MDGGMWLMQQINGQVARMKSLGMQLEAADIYNPNGSSLKDAVVMFDGGCTGVLVSNQGLLLTNHHCGYDQIQKHSSVQHNYLKDGFWSYSLAEELVNPGLEVEIVDEITDVTAAVKKELE 
         :                                                                                                                          
 5jwi(B) : *DGGMWLMQQINGQVARMKSLGMQLEAADIYNPNGSSLKDAVVMFDGGCTGVLVSNQGLLLTNHHCGYDQIQKHSSVQHNYLKDGFWSYSLAEELVNPGLEVEIVDEITDVTAAVKKELE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5jxk(A) : RIKKPSGLEFLSPRYLSSLAPEIVGKK----pGYRYEIKAFYGGNRYYMFTKKVFRDVRLVAAPPSSIGKFGSDTDNWAWPRHTGDFSIFRLYADKNGNPAEYSKDNVPYRPKRWVKVNA 
         :                                                                                                                          
 5jwi(B) : RIKKPSGLEFLSPRYLSSLAPEIVGKKAASRPGYRYEIKAFYGGNRYYMFTKKVFRDVRLVAAPPSSIGKFGSDTDNWAWPRHTGDFSIFRLYADKNGNPAEYSKDNVPYRPKRWVKVNA 
           ________________________________________________________________________________________________________________________ 

           _______________________________294_______________________________________336____________________________________________ 
 5jxk(A) : QGVKEGDFALIMGYPGTTYKFFTADEVTEWSEIDNNIRIEMRGILQDVMLREMLADPKINIMYAAKYASSQNGYKRAQGANWAIRRRSLREIKLAQQQEVLAWAKQKGIATTEEAVRAIS 
         :                                                                                                                          
 5jwi(B) : QGVKEGDFALIMGYPGTTYKFFTADEVTEWSEIDNNIRIEMRGILQDVMLREMLADP--nIMYAAKYASSQNGYKRAQGANWAIRRRSLREIKLAQQQEVLAWAKQKGIATTEEAVRAIS 
           _______________________________294_______________________________________336____________________________________________ 

           __385___________________________________________________________________________________________________________________ 
 5jxk(A) : KAIEGRQDLRMRQRYLLEGILMGIEMSNAPAADSDIADHWDDPARREAGLQSIRKQFEAFFNKDYSPEVEKDQLAIALLTRYAERIPAEKQPISIREGIAEYGSAKAYVEMIFDKSIYAS 
         :                                                                                                                          
 5jwi(B) : KAIEGRQDLRMRQRYLLEGILMGIEMSNAPAADSD--------------lQSIRKQFEAFFNKDYSPEVEKDQLAIALLTRYAERIPAEKQPI---eGIAEYGSAKAYVEMIFDKSIYAS 
           __385___________________________________________________________________________________________________________________ 

           ______________________________________541_______________________________________________________________________________ 
 5jxk(A) : RERFEEFMKNPDRDRLLRDPMSRFAASVAYEHQKLAKEVAAFDAPLAAAQRSYVASVLDMKGQPNLAPDANLTLRFTYGEIKGYQPRDVVTYGAKSTLEGVMEKEDPNNWEYVVDPKLKA 
         :                                                                                                                          
 5jwi(B) : RERFEEFMKNPDRDRLLRDPMSRFAASVAYEHQKLAKEVAAFDAPLAAAQRSYVASVLDMKGQPNLAPDANLTLRFTYGEIKGYQPRDVVTYGAKSTLEGVMEKEDPNNWEYVVDPKLKA 
           ______________________________________541_______________________________________________________________________________ 

           ___________________________________________________________________________________________________                      
 5jxk(A) : LYEAKNYGRYANSDGSMPVNFCATTHTTGGNAGSPVMNARGELIGLNFDRNWEGVGGDIEYLPNYQRSIILDIRYLLFIIDKFAGCQRLIDEIQPQFHH                      
         :                                                                                                                          
 5jwi(B) : LYEAKNYGRYANSDGSMPVNFCATTHTTGGNAGSPVMNARGELIGLNFDRNWEGVGGDIEYLPNYQRSIILDIRYLLFIIDKFAGCQRLIDEIQPQF**                      
           ___________________________________________________________________________________________________                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
21.6
Translation
(A)
-1.0
Closure
(%)
85.8
Bending Residues
( green )
  294 - 295
  336 - 337
  385 - 386
  541 - 544
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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