Asp/glu-Specific Dipeptidyl-Peptidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Asp/glu-Specific Dipeptidyl-Peptidase
  Conformer 1
(PDB)
5jwf (A)
  Conformer 2
(PDB)
5jwi (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 481 1.58   25 - 287   338 - 385   546 - 716
2 207 2.01   288 - 337   386 - 545

Sequence


           ________________________________________________________________________________________________________________________ 
 5jwf(A) : MDEGMWLMQQLGRKYAQMKERGLKMKEYDLYNPNGTSLKDAVVLFDGGCTGEVVSDRGLVLTNHHCGYDMIQAHSTLEHNYLENGFWAMREADELPNKDISVVFIDKIEDVTDYVKKELK 
         :                                                                                                                          
 5jwi(A) : MDGGMWLMQQINGQVARMKSLGMQLEAADIYNPNGSSLKDAVVMFDGGCTGVLVSNQGLLLTNHHCGYDQIQKHSSVQHNYLKDGFWSYSLAEELVNPGLEVEIVDEITDVTAAVKKELE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5jwf(A) : AIKDPNSMDYLSPKYLQKLADKKAGKNFSAKNPGLSVEIKAFYGGNLYLMFTKKTYTDVRLVGAPPSSIGKFGADTDNWIWPRHTGDFSIFRIYADKNGNPAPYSEDNVPLKPKRFFNIS 
         :                                                                                                                          
 5jwi(A) : RIKKPSGLEFLSPRYLSSLAPEIVGKK-AASRPGYRYEIKAFYGGNRYYMFTKKVFRDVRLVAAPPSSIGKFGSDTDNWAWPRHTGDFSIFRLYADKNGNPAEYSKDNVPYRPKRWVKVN 
           ________________________________________________________________________________________________________________________ 

           ______________________285_________________________________________________337___________________________________________ 
 5jwf(A) : LGGVQENDYAMIMGFPGTTHRYFTASEVDEWKSIDNDIRIRMRDIRQGVMLREMLADPQIKIMYSAKYAASQNAYKRAIGANWAIKTRGLRQNKQAMQDRLIAWGAKQGTPRYEEAVHEI 
         :                                                                                                                          
 5jwi(A) : AQGVKEGDFALIMGYPGTTYKFFTADEVTEWSEIDNNIRIEMRGILQDVMLREMLADPKINIMYAAKYASSQNGYKRAQGANWAIRRRSLREIKLAQQQEVLAWAKQKGIATTEEAVRAI 
           ______________________284_________________________________________________336___________________________________________ 

           __385___________________________________________________________________________________________________________________ 
 5jwf(A) : DATVAKRADLRRRYWMIEEGIIRGIEFARSPIPTEDETKALQGNDASARKEAIDKIRTRYSKFANKDYSAEVDK-KVAVAMLTEYLKEIPYENLPLHLRLVKDRFAGDVQAYVDDIFARS 
         :                                                                                                                          
 5jwi(A) : SKAIEGRQDLRMRQRYLLEGILMGIEM--SNAPAADSDIADHWDDPARREAGLQSIRKQFEAFFNKDYSPEVEKDQLAIALLTRYAERIPAEKQPISIREGIAEY-GSAKAYVEMIFDKS 
           __384___________________________________________________________________________________________________________________ 

           ___________________________________________545__________________________________________________________________________ 
 5jwf(A) : VFGSEAQFDAFAAVPSVEKLAEDPMVLFASSVFDEYRKLYNELRPYDDPILRAQRTYIAGLLEMDGDQDQFPDANLTLRFTYGQVKGYSPRDNVYYGHQTTLDGVMEKEDPDNWEFVVDP 
         :                                                                                                                          
 5jwi(A) : IYASRERFEEFMKNPDRDRLLRDPMSRFAASVAYEHQKLAKEVAAFDAPLAAAQRSYVASVLDMKGQPNLAPDANLTLRFTYGEIKGYQPRDVVTYGAKSTLEGVMEKEDPNNWEYVVDP 
           ___________________________________________542__________________________________________________________________________ 

           _____________________________________________________________________________________________________                    
 5jwf(A) : KLKAVYERKDFGRYADRSGRMPVAFCATTHTTGGNAGSPVMNANGELIGLNFDRNWEGVGGDIQYLADYQRSIIVDIRYVLLVIDKVGGCQRLLDEMNIVP                    
         :                                                                                                                          
 5jwi(A) : KLKALYEAKNYGRYANSDGSMPVNFCATTHTTGGNAGSPVMNARGELIGLNFDRNWEGVGGDIEYLPNYQRSIILDIRYLLFIIDKFAGCQRLIDEIQPQF                    
           _____________________________________________________________________________________________________                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.3
Translation
(A)
-0.3
Closure
(%)
75.0
Bending Residues
( green )
  285 - 288
  337 - 338
  385 - 386
  545 - 547
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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