Atpase Inhibitor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atpase Inhibitor
  Conformer 1
(PDB)
1gmj (B)
  Conformer 2
(PDB)
1gmj (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 31 0.6   46 - 76
2 21 1.07   25 - 45

Sequence


           ________________________45__________________________________                                                             
 1gmj(B) : GAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ                                                             
         :                                                                                                                          
 1gmj(D) : ***GKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLK*                                                             
           ________________________45__________________________________                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
29.0
Translation
(A)
0.9
Closure
(%)
98.9
Bending Residues
( green )
  45 - 46
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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