Autoinducer 2 Sensor Kinase/phosphatase Luxq

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Autoinducer 2 Sensor Kinase/phosphatase Luxq
  Conformer 1
(PDB)
2hje (A)
  Conformer 2
(PDB)
2hj9 (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 36 6.38   190 - 221   231 - 234
2 29 11.07   222 - 230   235 - 264

Sequence


           ________________________________________________________________________________________________________________________ 
 2hje(A) : SKQQTSALIHNIFDSHFAAIQIHHDSNSKSEVIRDFYTDRDTDVLNFFFLSIDQSDPSHTPEFRFLTDHKGIIWDDGNAHFYGVNDLILDSLANRVSFSNNWYYINVMTSIGSRHMLVRR 
         :                                                                                                                          
 2hj9(A) : **********************************************************************************************************GYWGYQEFLDEFPE 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________221______230_234_________________________________________________________ 
 2hje(A) : VPILDPSTGEVLGFSFNAVVLDNNFALMEKLKSESNVDNVVLVANSVPLANSLIGDEPYNVADVLQlLVIETPIVVNAVTTELCLLTVQD****************************** 
         :                                                                                                                          
 2hj9(A) : QRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI 
           ________________________________________________90_______99_103_________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2hje(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 2hj9(A) : TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNF----E-LQSAYYTKATKQSGYDAAKASLAKHPDVDFIYACSTDVALGAVDA 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________________                               
 2hje(A) : ******************************************************************************************                               
         :                                                                                                                          
 2hj9(A) : LAELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMAEAIKWDLEDKPVPTVYSGDFEIVTKADSPERIEALKKRAFRYSDN                               
           __________________________________________________________________________________________                               

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
173.8
Translation
(A)
-0.6
Closure
(%)
11.2
Bending Residues
( green )
  221 - 222
  230 - 231
  234 - 235
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download