Benzoylformate Decarboxylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Benzoylformate Decarboxylase
  Conformer 1
(PDB)
4gm0 (A)
  Conformer 2
(PDB)
5dgd (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 492 0.14   8 - 456   477 - 519
2 20 0.39   457 - 476

Sequence


           ________________________________________________________________________________________________________________________ 
 4gm0(A) : ASVHGTTYELLRRQGIDTVFGNPGSNELPFLKDFPEDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRP 
         :                                                                                                                          
 5dgd(A) : ASVHGTTYELLRRQGIDTVFGNPGSNELPFLKDFPEDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRP 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4gm0(A) : LVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP 
         :                                                                                                                          
 5dgd(A) : LVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4gm0(A) : FPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDAGRLHPETVFDT 
         :                                                                                                                          
 5dgd(A) : FPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDAGRLHPETVFDT 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________________454___________________476_____ 
 4gm0(A) : LNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGNGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGI 
         :                                                                                                                          
 5dgd(A) : LNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGVLRWIAGVLEAENVPGLDVPGI 
           __________________________________________________________________________________________454___________________476_____ 

           _____________________________________________                                                                            
 4gm0(A) : DFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTVSP                                                                            
         :                                                                                                                          
 5dgd(A) : DFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTVS*                                                                            
           _____________________________________________                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.8
Translation
(A)
-0.1
Closure
(%)
68.5
Bending Residues
( green )
  454 - 457
  476 - 478
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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