Benzoylformate Decarboxylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Benzoylformate Decarboxylase
  Conformer 1
(PDB)
4k9k (A)
  Conformer 2
(PDB)
3fzn (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 306 0.3   5 - 183   210 - 210   365 - 366   371 - 381   397 - 497   510 - 521
2 211 0.31   184 - 209   211 - 364   367 - 370   382 - 396   498 - 509

Sequence


           ________________________________________________________________________________________________________________________ 
 4k9k(A) : ASVHGTTYELLRRQGIDTVFGNPGSNELPFLKDFPEDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRP 
         :                                                                                                                          
 3fzn(A) : ASVHGTTYELLRRQGIDTVFGNPGSNELPFLKDFPEDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRP 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________183_______________________209________________________________ 
 4k9k(A) : LVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP 
         :                                                                                                                          
 3fzn(A) : LVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP 
           ___________________________________________________________183_______________________209________________________________ 

           ________________________________________________________________________________________________________________________ 
 4k9k(A) : FPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYYQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDAGRLHPETVFDT 
         :                                                                                                                          
 3fzn(A) : FPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDAGRLHPETVFDT 
           ________________________________________________________________________________________________________________________ 

           364______________381____________396_____________________________________________________________________________________ 
 4k9k(A) : LNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGI 
         :                                                                                                                          
 3fzn(A) : LNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGI 
           364______________381____________396_____________________________________________________________________________________ 

           _____________497_________509________________                                                                             
 4k9k(A) : DFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTVS                                                                             
         :                                                                                                                          
 3fzn(A) : DFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTV*                                                                             
           _____________497_________509________________                                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
1.3
Translation
(A)
0.1
Closure
(%)
100.0
Bending Residues
( green )
  183 - 184
  209 - 211
  364 - 371
  381 - 382
  396 - 397
  497 - 498
  509 - 510
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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