Beta1mut

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta1mut
  Conformer 1
(PDB)
4yei (B)
  Conformer 2
(PDB)
3du1 (X)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 35 4.1   142 - 172   176 - 180
2 120 2.07   22 - 141
3 54 4.68   173 - 175   181 - 231

Sequence


           ___________________________________________________________________________________________________________________137__ 
 4yei(B) : HMNVGEILRHYAAGKRNFQHINLQEIELTNASLTGADLSYANLHHANLSRANLRSADLRNANLSHANLSGANLEEANLEAANLRGADLHEANLSGADLQEANLTQANLKDANLSDANLE- 
         :                                                                                                                          
 3du1(X) : HMNVGEILRHYAAGKRNFQHINLQEIELTNASLTGADLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSR 
           ___________________________________________________________________________________________________________________117__ 

           __________________________________________________172_______178________________________________________________________  
 4yei(B) : ----QADL---------------AGADLQGAVLDGANLHGANLNNANLSEAMLTRA----NLEQADLSGARTTGARLDDASLHGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLA  
         :                                                                                                                          
 3du1(X) : CLLFQADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNLA-ADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIMPDGSIH*  
           __________________________________________________172_______182________________________________________________________  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
102.0
Translation
(A)
-3.6
Closure
(%)
0.4
Bending Residues
( green )
  137 - 144
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
73.9
Translation
(A)
2.0
Closure
(%)
6.3
Bending Residues
( green )
  172 - 173
  175 - 176
  178 - 181
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

Chart image not calculated - the graph is too big to count connection types.

PyMOL Script

Download and extract PyMOL PML script file Download