Bifunctional P-450/nadph-P450 Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Bifunctional P-450/nadph-P450 Reductase
  Conformer 1
(PDB)
4kf2 (A)
  Conformer 2
(PDB)
3qi8 (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 325 0.91   6 - 7   20 - 40   49 - 49   51 - 61   68 - 175   213 - 332   354 - 378   391 - 395   397 - 454
2 61 0.58   8 - 19   41 - 48   50 - 50   62 - 67   333 - 353   379 - 390   396 - 396
3 27 0.59   176 - 212

Sequence


           ______7__________19___________________40______48___________61____67_____________________________________________________ 
 4kf2(A) : **KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFFGDGLVTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMV 
         :                                                                                                                          
 3qi8(A) : TIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYISSQRLVKEACDESRFDKNL------------------------wKKARNILLPRLSQQAMKGYHAMMV 
           ______7__________19___________________40______48___________61____67_____________________________________________________ 

           ____________________________________________167_______________________________________211_______________________________ 
 4kf2(A) : DIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDEAMNKLQRAdDPAYDENKRQFQEDIKVMNDLVDKIIADRKAS--qSDDLLTHMLNGKD 
         :                                                                                                                          
 3qi8(A) : DIAVQLVQKWERLNSDEHIEVPEDMTRLTLDTIGLCGFNYRINSFYRDQPHPFITSMVRALDEVMNKLQ--------eNKRQFQEDIKVMNDLVDKIIADRKASGEQSDDLLTHMLHGKD 
           ____________________________________________167_______________________________________211_______________________________ 

           _______________________________________________________________________________________332__________________353_________ 
 4kf2(A) : PETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHR 
         :                                                                                                                          
 3qi8(A) : PETGEPLDDENIRYQIITFLIAGHETTSGLLTFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRIWPTAPAFSLYAKEDTMLGGEYPLEKGDELMVLIPQLHR 
           _______________________________________________________________________________________332__________________353_________ 

           _____________378_________390__395_______________________________________________________________                         
 4kf2(A) : DKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKKIPLGG*                         
         :                                                                                                                          
 3qi8(A) : DKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIEETLTLKPKGFVIKAKSKKIPLGGI                         
           _____________378_________390__395_______________________________________________________________                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.7
Translation
(A)
-0.1
Closure
(%)
31.9
Bending Residues
( green )
  7 - 9
  19 - 24
  40 - 41
  48 - 51
  61 - 62
  67 - 68
  332 - 333
  353 - 354
  378 - 379
  390 - 391
  395 - 397
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
22.4
Translation
(A)
2.2
Closure
(%)
98.8
Bending Residues
( green )
  167 - 176
  211 - 214
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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