Calbindin D9k

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calbindin D9k
  Conformer 1
(PDB)
4icb (A)
  Conformer 2
(PDB)
1ht9 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 45 2.26   2 - 46
2 27 0.69   47 - 73

Sequence


           _________________________________________42_________________________________                                             
 4icb(A) : MKSPEELKGIFEKYAAKEGDPNQLSKEELKLLLQTEFPSLLKGPSTLDELFEELDKNGDGEVSFEEFQVLVKKISQ                                             
         :                                                                                                                          
 1ht9(A) : MKSPEELKGIFEKYAAKEGDPNNLSKEELKLLLQTEFPSLLKGMSTLDELFEELDKNGDGEVSFEEFQVLVKKISQ                                             
           _________________________________________42_________________________________                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
180.0
Translation
(A)
0.8
Closure
(%)
62.3
Bending Residues
( green )
  42 - 47
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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