Calmodulin Cmd-1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin Cmd-1
  Conformer 1
(PDB)
1ooj (A)
  Conformer 2
(PDB)
1qx5 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 73 4.39   8 - 80
2 37 3.9   81 - 117

Sequence


           ___________________________________________________________________________79___________________________________________ 
 1ooj(A) : ***TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEV 
         :                                                                                                                          
 1qx5(B) : DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEV 
           ___________________________________________________________________________78___________________________________________ 

           _________________________                                                                                                
 1ooj(A) : DEMIREADIDGDGQVNYEEFVTMM*                                                                                                
         :                                                                                                                          
 1qx5(B) : DEMIREADIDGDGQVNYEEFVQMMT                                                                                                
           _________________________                                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
127.7
Translation
(A)
-9.6
Closure
(%)
97.3
Bending Residues
( green )
  79 - 81
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download