Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5k8q (A)
  Conformer 2
(PDB)
3sg6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 69 2.64   70 - 144
2 66 0.51   4 - 69

Sequence


           ________________________________________________________________________________________________________________________ 
 5k8q(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 3sg6(A) : SRRKWNKTGHAVRAIGRLSSLIANVYIMADKQKNGIKANFKIRHNIEDGGVQLAYHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLLEFVTAAGITLkGEELFTGVVPILV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5k8q(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 3sg6(A) : ELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLvQCFSRYPDHMKQHDFFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGH 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________68_________________________________________________ 
 5k8q(A) : ****DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKsEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
         :                                                                                                                          
 3sg6(A) : KLEYNqLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR---sEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
           ____________________________________________________________________372_________________________________________________ 

           ___________________________                                                                                              
 5k8q(A) : VDEMIREADIDGDGQVNYEEFVQMMTA                                                                                              
         :                                                                                                                          
 3sg6(A) : VDEMIREADIDGDGQVNYEEFVQMMT*                                                                                              
           ___________________________                                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
166.0
Translation
(A)
0.0
Closure
(%)
80.8
Bending Residues
( green )
  68 - 74
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download