Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5sy1 (C)
  Conformer 2
(PDB)
2x51 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 70 3.38   77 - 146
2 63 2.08   14 - 76

Sequence


           _________________________________________________________________________76_____________________________________________ 
 5sy1(C) : ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 
         :                                                                                                                          
 2x51(B) : **QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 
           _________________________________________________________________________76_____________________________________________ 

           ____________________________                                                                                             
 5sy1(C) : VDEMIREADIDGDGQVNYEEFVTMMTS*                                                                                             
         :                                                                                                                          
 2x51(B) : VDEMIREADIDGDGQVNYEEFVTMMTSK                                                                                             
           ____________________________                                                                                             

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
173.0
Translation
(A)
-2.6
Closure
(%)
81.1
Bending Residues
( green )
  76 - 83
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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