Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5sy1 (C)
  Conformer 2
(PDB)
4zlk (B)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 86 8.85   16 - 23   59 - 143
2 35 0.83   24 - 58

Sequence


           ____________________23_________________________________58_______________________________________________________________ 
 5sy1(C) : ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 
         :                                                                                                                          
 4zlk(B) : ******EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA-------sEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
           ____________________22_________________________________57_______________________________________________________________ 

           ___________________________                                                                                              
 5sy1(C) : VDEMIREADIDGDGQVNYEEFVTMMTS                                                                                              
         :                                                                                                                          
 4zlk(B) : VDEMIREADIDGDGQVNYEEFVQMMT*                                                                                              
           ___________________________                                                                                              

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
175.7
Translation
(A)
-0.2
Closure
(%)
80.6
Bending Residues
( green )
  23 - 26
  58 - 59
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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