Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5k8q (A)
  Conformer 2
(PDB)
3wfn (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 40 1.67   4 - 28   61 - 75
2 28 1.77   29 - 60
3 25 1.04   81 - 100   129 - 136
4 37 2.7   101 - 128   137 - 145

Sequence


           ________________________________28______________________52_____________________75______________________100______________ 
 5k8q(A) : *******DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK---sEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE 
         :                                                                                                                          
 3wfn(B) : HHHHHMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV----nGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE 
           ________________________________29______________________53_____________________76______________________101______________ 

           ___________128_____136__________________________________                                                                 
 5k8q(A) : KLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA***********************                                                                 
         :                                                                                                                          
 3wfn(B) : KLTDEEVDEMIREAi---DgQVNYEEFVQMMTAgGEEVSAVVLQRAYRGHLARRGF                                                                 
           ___________129_____137__________________________________                                                                 

Morph

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Status: Initialising

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 58.0 1.7 90.9   28 - 31   52 - 62 Bending Region Analysis
1 3 145.6 -6.8 97.6   75 - 82 Bending Region Analysis
3 4 34.5 1.6 99.8   100 - 101   128 - 134   136 - 137 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 3 ———› Residue 4

Conformer 2 Contact:
Residue 4 ———› Residue 3

Movement classification: Hinge

PyMOL Script

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