Calpain 9

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calpain 9
  Conformer 1
(PDB)
1ziv (A)
  Conformer 2
(PDB)
2ary (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 166 2.09   30 - 189   191 - 191   197 - 203
2 137 1.85   190 - 190   192 - 196   204 - 335

Sequence


           ________________________________________________________________________________________________________________________ 
 1ziv(A) : ********SFEQMRQECLQRGTLFEDADFPASNSSLFYSpQIP-------FVWKRPGEIVKNPEFILGGATRTDICQGELGDCWLLAAIASLTLNQKALARVIPQDQSFGPGYAGIFHFQ 
         :                                                                                                                          
 2ary(A) : NAIKYLGQDYEQLRVRCLQSGTLFRDEAFPPVPQSLGYKDLGPNSSKTYGIKWKRPTELLSNPQFIVDGATRTDICQGALGDCWLLAAIASLTLNDTLLHRVVPHGQSFQNGYAGIFHFQ 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________188____________203___________________________________________________ 
 1ziv(A) : FWQHSEWLDVVIDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTGGVAETFQTKEAPENFYEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGH 
         :                                                                                                                          
 2ary(A) : LWQFGEWVDVVVDDLLPIKDGKLVFVHSAEGNEFWSALLEKAYAKVNGSYEALSGGSTSEGFEDFTGGVTEWYELRKAPSDLYQIILKALERGSLLGCSIDISSVLDMEAITFKKLVKGH 
           ___________________________________________________206____________221___________________________________________________ 

           ___________________________________________________________________________________                                      
 1ziv(A) : AYSVTGIDQVSFRGQRIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFKDFKAHFDKVEICNLT                                      
         :                                                                                                                          
 2ary(A) : AYSVTGAKQVNYRGQVVSLIRMRNPWGEVEWTGAWSDSSSEWNNVDPYERDQL-RVKMEDGEFWMSFRDFMREFTRLEICNLT                                      
           ___________________________________________________________________________________                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
55.0
Translation
(A)
2.2
Closure
(%)
58.1
Bending Residues
( green )
  188 - 198
  203 - 206
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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