Carminomycin 4-O-Methyltransferase Dnrk

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Carminomycin 4-O-Methyltransferase Dnrk
  Conformer 1
(PDB)
5jr3 (A)
  Conformer 2
(PDB)
5jr3 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 187 0.52   13 - 149   154 - 159   254 - 255   283 - 313   335 - 345
2 152 0.4   150 - 153   160 - 253   256 - 282   314 - 334   346 - 351

Sequence


           ________________________________________________________________________________________________________________________ 
 5jr3(A) : *PQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRT 
         :                                                                                                                          
 5jr3(C) : RPQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRT 
           ________________________________________________________________________________________________________________________ 

           _________________149_153___159__________________________________________________________________________________________ 
 5jr3(A) : GRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAI 
         :                                                                                                                          
 5jr3(C) : GRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAI 
           _________________149_153___159__________________________________________________________________________________________ 

           _253__________________________282__________________________311__________________332__________345________                 
 5jr3(A) : ILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAPAA                 
         :                                                                                                                          
 5jr3(C) : ILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAPAA                 
           _253__________________________282__________________________311__________________332__________345________                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.1
Translation
(A)
0.1
Closure
(%)
35.5
Bending Residues
( green )
  149 - 150
  153 - 154
  159 - 169
  253 - 256
  282 - 283
  311 - 314
  332 - 341
  345 - 346
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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