DynDom - Protein Domain Motions

Cell Division Protein Ftsa

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Cell Division Protein Ftsa
Conformer 1 (PDB)	3wqt (A)
Conformer 2 (PDB)	3wqt (D)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	263	0.44	7 - 93 108 - 108 120 - 130 152 - 235 258 - 263 294 - 375
2	35	0.58	94 - 107 109 - 114 137 - 151
3	43	0.57	236 - 257 264 - 293

Sequence

`________________________________________________________________________________________93___________107________________` `3wqt(A) : HYYVSIDIGSSSVKTIVGEKFHNGINVIGTGQTYTSGIKNGLIDDFDIARQAIKDTIKKASIASGVDIKEVFLKLPIIGTEVYDESNEIDFYEDTEINGSHIEKVLEGIREqETEVINVF` `:` `3wqt(D) : HYYVSIDIGSSSVKTIVGEK----iNVIGTGQTYTSGIKNGLIDDFDIARQAIKDTIKKASIASGVDIKEVFLKLPIIGTEVYDESNEIDFYEDTEINGSHIEKVLEGIRE-eTEVINVF` `________________________________________________________________________________________93___________107________________` `130__________________151_________________________________________________________________________________235____________` `3wqt(A) : PIRFIVDKENEVSDPKELIARHSLKVEAGVIAIQKSILINMIKCVEACGVDVLDVYSDAYNYGSILTATEKELGACVIDIGEDVTQVAFYERGELVDADSIEMAGRDITDDIAQGLNTSY` `:` `3wqt(D) : PIRFIVDKENEVSDPKELIARHSLKVEAGVIAIQKSILINMIKCVEACGVDVLDVYSDAYNYGSILTATEKELGACVIDIGEDVTQVAFYERGELVDADSIEMAGRDITDDIAQGLNTSY` `130__________________151_________________________________________________________________________________235____________` `_______257_________________________________293__________________________________________________________________________` `3wqt(A) : ETAEKVKHQYGHAFYDSASDQDIFTVEQVDSDETVQYTQKDLSDFIEARVEEIFFEVFDVLQDLGLTKVNGGFIVTGGSANLLGVKELLSDMVSEKVRIHTPSQMGIRKPEFSSAISTIS` `:` `3wqt(D) : ETAEKVKHQYGHAFYDS-----iFTVEQ----eTVQYTQKDLSDFIEARVEEIFFEVFDVLQDLG----nGGFIVTGGSANLLGVKELLSDMVSEKVRIHTPSQMGIRKPEFSSAISTIS` `_______257_________________________________293__________________________________________________________________________` `__________` `3wqt(A) : SSIAFDELLD` `:` `3wqt(D) : SSIAFDELLD` `__________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	9.3
Translation (A)	0.1
Closure (%)	21.3
Bending Residues ( green )	93 - 94 107 - 121 130 - 137 151 - 152
Bending Region Analysis

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( yellow )	3
Rotation Angle (deg)	6.4
Translation (A)	0.0
Closure (%)	67.0
Bending Residues ( green )	235 - 236 257 - 258 260 - 264 293 - 294
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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