DynDom - Protein Domain Motions

Chitinase A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Chitinase A
Conformer 1 (PDB)	1ctn (A)
Conformer 2 (PDB)	3ars (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	444	1.68	38 - 41 45 - 56 104 - 109 127 - 555
2	78	1.59	27 - 37 42 - 44 57 - 103 110 - 126

Sequence

`______________36___41_44___________56____________________________________________103___109______________126_____________` `1ctn(A) : AAPGKPTI-AWG--NTKFAIVEVDQAATA-YNNLVKVKNAADVSVSWNLWNGDTGTTAKILLNGKEAWSGPSTGSSGTANFKVNKGGRYQMQVALCNADGCTASDATEIVVADTDGSHLA` `:` `3ars(A) : APTAPSIDMYGSNNLQFSKIELAMETTSGYNDMVKYHELAKIKVKFNQWSGTSGDTYNVYFDGVKVATGAITGSQTTASFEYGQGGLYQMEIEACDATGCSKSAPVEITIADTDGSHLK` `______________36___41_44___________57____________________________________________104___110______________127_____________` `________________________________________________________________________________________________________________________` `1ctn(A) : PLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQNLTHLLYGFIPICGGNGINDSLKEIEG-SFQALQRSCQGREDFKISIHDPFAALQKA--QKGVTAWDDPYKGNFGQL` `:` `3ars(A) : PLTMNVDPNNKSYNTDPSIVMGTYFVEWGIYGRDYTVDNMPVDNLTHILYGFIPICGPN---ESVKSVGGNSFNALQTACRGVNDYEVVIHDPWAAYQKSFPQAG-HEYSTPIKGNYAML` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1ctn(A) : MALKQAHPDLKILPSIGGWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSP-QDGETYVLLMKELRAMLDQLSTETGRKYELTSAISAGKDKIDKVAY` `:` `3ars(A) : MALKQRNPDLKIIPSIGGGTLSDPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDIDWEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDVDY` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1ctn(A) : NVAQNSMDHIFLMSYDFYGAFDLKNL-GHQTALNAPAW-KPDT----------------AYTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNG---YQNNIPFTGTATGPVKGT---` `:` `3ars(A) : ADAVQYMDYIFAMTYDFYGGWN--NVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQ` `________________________________________________________________________________________________________________________` `___________________________________________________________________________________________________` `1ctn(A) :` `--WENGIVDYRQIAGQFMSGE-------WQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMNASLGNSAG` `:` `3ars(A) :` `GVWEDGVIDYKGIKS-FMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELITFDDHRSVLAKGNYAKSLGLAGLFSWEIDADNGDILNAMHEGMA***` `___________________________________________________________________________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	16.2
Translation (A)	-0.4
Closure (%)	99.4
Bending Residues ( green )	36 - 38 41 - 42 44 - 45 56 - 58 103 - 104 109 - 110 126 - 127
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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