Chloride Channel Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Chloride Channel Protein
  Conformer 1
(PDB)
5tqq (A)
  Conformer 2
(PDB)
6qvd (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 442 2.41   50 - 530
2 128 4.3   531 - 677

Sequence


           ________________________________________________________________________________________________________________________ 
 5tqq(A) : *EDWYFLTVLGVLMALISFTMSFTVGRVVRAHKWLYREIGDSHLLRYLSWTVYPVALVSFSSGFSQSITPFSGGSGIPELKTILSGVVLEDYLDIKNFGAKAVGLTCTLASGSTIFLGKV 
         :                                                                                                                          
 6qvd(A) : GEDGIFLVLLGLLMALVSWSMDYVSAKSLQAYKWSYAQMQPSLPLQFLVWVTFPLVLILFSALFCHLISPQAVGSGIPEMKTILRGVVLKEYLTMKAFVAKVVALTAGLGSG--IPVGKE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5tqq(A) : GPFVHLSVMIAAYLGRVRAKATGESENKSKRNEMLVAGAAVGVATVFAAPFSGVLFCIEVVSSHFSVWDYWRGFFAATCGAFMFRLLAVFN------------------pFDLPEIFFFV 
         :                                                                                                                          
 6qvd(A) : GPFVHIASICAAVLSKFMSVFy--------YSDILTVGCAVGVGCCFGTPLGGVLFSIEVTSTYFAVRNYWRGFFAATFSAFVFRVLAVWNKDAVTITALFRTNFRMDFPFDLKELPAFA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5tqq(A) : ALGAICGVASCAYLFCQRKFLGFVKTNPVLSKLMATSKPLYSALAALVLASVTYPPGAGRFMASRLSMREYLDSLLDHNSWALLTRQASPPWPVEPDPQNLWFEWYHPQFTIFGTLAFFL 
         :                                                                                                                          
 6qvd(A) : AIGICCGLLGAVFVYLHRQVMLGVRKHKALSQFLAKHRLLYPGIVTFVIASFTFPPGMGQFMAGELMPREAISTLFDNNTWV---KHAGDP---ESLGQSAV--WIHPRVNVVIIIFLFF 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5tqq(A) : VMKFWMLILATTIPMPAGYFMPIFIFGAAIGRLLGEALSVAFPEGIV---vTNPIMPGGYALAGAAAFSGAVTHSISTALLAFELTGQIVHALPVLMAVLAANAIAQSCQPSFYDGTIIV 
         :                                                                                                                          
 6qvd(A) : VMKFWMSIVATTMPIPCGGFMPVFVLGAAFGRLVGEIMAMLFPDGILFDDIIYKILPGGYAVIGAAALTGAVSHTVSTAVICFELTGQIAHILPMMVAVILANMVAQSLQPSLYDSIIQV 
           ________________________________________________________________________________________________________________________ 

           _530____________________________________________________________________________________________________________________ 
 5tqq(A) : KKLPYLPWIRGRKISSHRVTVEHFMNRAITTLAKDTPQEEVVKVVTSTDMAEYPLVASTESQTLVGTMRRAQLVQALQAlQDILAEGCPVEPVTLKLSPETSLHQAHNLFELLNLQSLFV 
         :                                                                                                                          
 6qvd(A) : KKLPYLGW---NQLSKYTIFVEDIMVRDVKFVSASYTYGELRTLLQTTTVKTLPLVDSKDSMILLGSVERSEL-QAL--LQRHLC-sCCIDQSPFQLVEQTTLHKTHTLFSLLGLHLAYV 
           _588____________________________________________________________________________________________________________________ 

           _________________________                                                                                                
 5tqq(A) : TSQGRAVGFVSWVELEKAISKLTNP                                                                                                
         :                                                                                                                          
 6qvd(A) : TSMGKLRGVLALEELQKAIEG****                                                                                                
           _________________________                                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
24.6
Translation
(A)
1.0
Closure
(%)
51.1
Bending Residues
( green )
  530 - 531
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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