Cmp/dcmp-Type Deaminase Domain-Containing Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cmp/dcmp-Type Deaminase Domain-Containing Protein
  Conformer 1
(PDB)
7ds0 (A)
  Conformer 2
(PDB)
7ds1 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 147 0.21   6 - 7   29 - 52   62 - 187
2 24 0.21   8 - 22   53 - 61

Sequence


           ____7____________21_____________________________52_______61_____________________________________________________________ 
 7ds0(A) : *PHAKYLRECLSLAEKSPPRPTNFRVGAILVSRKEGDYKTEDDRIVSTGYTMELAGNTHAEQCCLSNYAAVHSVPEDRVWEVLPSEPDRKLVMYVTMEPCGKRLSGNLPCVQRIIRTRQG 
         :                                                                                                                          
 7ds1(A) : SPHAKYLRECLSLAEKSPPRPTNFRVGAILVSRKEGDYKTEDDRIVSTGYTMELAGNTHAEQCCLSNYAAVHSVPEDRVWEVLPSEPDRKLVMYVTMEPCGKRLSGNLPCVQRIIRTRQG 
           ____7____________21_____________________________52_______61_____________________________________________________________ 

           _______________________________________________________________                                                          
 7ds0(A) : DRKGIQKIYFGVKEPG-sEGCQMLTAAGIDWQVVNGLEREILEVAVAGHENREEEVKAALDTL                                                          
         :                                                                                                                          
 7ds1(A) : DRKGIQKIYFGVKEPGTsEGCQMLTAAGIDWQVVNGLEREILEVAVAGHENREEEVKAALDTL                                                          
           _______________________________________________________________                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.4
Translation
(A)
-0.1
Closure
(%)
70.9
Bending Residues
( green )
  7 - 8
  21 - 29
  52 - 53
  61 - 62
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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