3-Dehydroquinate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Dehydroquinate Synthase
  Conformer 1
(PDB)
1nva (A)
  Conformer 2
(PDB)
1nvf (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 193 1.1   7 - 9   16 - 184   222 - 235   248 - 254
2 182 0.87   6 - 6   10 - 15   185 - 221   236 - 247   255 - 389

Sequence


           __6__9____15____________________________________________________________________________________________________________ 
 1nva(A) : PTKISILGRESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGF 
         :                                                                                                                          
 1nvf(A) : PTKISILGRESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGF 
           __6__9____15____________________________________________________________________________________________________________ 

           __________________________________________________________184__________________________________221___________235________ 
 1nva(A) : VASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTEEILKARI 
         :                                                                                                                          
 1nvf(A) : VASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTEEILKARI 
           __________________________________________________________184__________________________________221___________235________ 

           _247____254_____________________________________________________________________________________________________________ 
 1nva(A) : LASARHKAYVVSA----gGLRNLLNWGHSIGHAIEAILTPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMALD-----pKK 
         :                                                                                                                          
 1nvf(A) : LASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAILTPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMALDKKNDGPKK 
           _247____254_____________________________________________________________________________________________________________ 

           _____________________________                                                                                            
 1nva(A) : KIVLLSAIGTPYETRASVVANEDIRVVLA                                                                                            
         :                                                                                                                          
 1nvf(A) : KIVLLSAIGTPYETRASVVANEDIRVVL*                                                                                            
           _____________________________                                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.0
Translation
(A)
-0.1
Closure
(%)
97.9
Bending Residues
( green )
  6 - 7
  9 - 10
  15 - 16
  184 - 185
  221 - 233
  235 - 236
  247 - 248
  254 - 265
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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