3-Dehydroquinate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Dehydroquinate Synthase
  Conformer 1
(PDB)
1nva (A)
  Conformer 2
(PDB)
1dqs (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 186 0.82   142 - 145   185 - 247   255 - 389
2 182 0.59   6 - 141   146 - 184   248 - 254

Sequence


           ________________________________________________________________________________________________________________________ 
 1nva(A) : PTKISILGRESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGF 
         :                                                                                                                          
 1dqs(A) : PTKISILGRESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGF 
           ________________________________________________________________________________________________________________________ 

           _______________141_145____________________________________184___________________________________________________________ 
 1nva(A) : VASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTEEILKARI 
         :                                                                                                                          
 1dqs(A) : VASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRR-------rFEGTEEILKARI 
           _______________141_145____________________________________184___________________________________________________________ 

           _247____254_____________________________________________________________________________________________________________ 
 1nva(A) : LASARHKAYVVSA----gGLRNLLNWGHSIGHAIEAILTPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMALD-----pKK 
         :                                                                                                                          
 1dqs(A) : LASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAILTPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMALDKKNDGPKK 
           _247____254_____________________________________________________________________________________________________________ 

           _____________________________                                                                                            
 1nva(A) : KIVLLSAIGTPYETRASVVANEDIRVVLA                                                                                            
         :                                                                                                                          
 1dqs(A) : KIVLLSAIGTPYETRASVVANEDIRVVL*                                                                                            
           _____________________________                                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.3
Translation
(A)
-0.5
Closure
(%)
100.0
Bending Residues
( green )
  141 - 142
  145 - 146
  184 - 185
  247 - 248
  254 - 265
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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