3-Deoxy-Manno-Octulosonate Cytidylyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Deoxy-Manno-Octulosonate Cytidylyltransferase
  Conformer 1
(PDB)
1h7g (A)
  Conformer 2
(PDB)
1h7g (B)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 207 0.4   5 - 21   29 - 218
2 26 0.42   22 - 28   219 - 237

Sequence


           ___________________21_____28____________________________________________________________________________________________ 
 1h7g(A) : SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPAL 
         :                                                                                                                          
 1h7g(B) : SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPAL 
           ___________________21_____28____________________________________________________________________________________________ 

           _______________________________________________________________________________________________218______________________ 
 1h7g(A) : PVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQE 
         :                                                                                                                          
 1h7g(B) : PVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQE 
           _______________________________________________________________________________________________218______________________ 

           _____                                                                                                                    
 1h7g(A) : LAENA                                                                                                                    
         :                                                                                                                          
 1h7g(B) : L****                                                                                                                    
           _____                                                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.0
Translation
(A)
-0.2
Closure
(%)
47.5
Bending Residues
( green )
  21 - 22
  28 - 29
  218 - 219
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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