DynDom - Protein Domain Motions

2,4-Dienoyl-Coa Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	2,4-Dienoyl-Coa Reductase
Conformer 1 (PDB)	1h0k (A)
Conformer 2 (PDB)	1n9g (A)
Window Length	7
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	205	0.4	26 - 173 296 - 301 321 - 321 324 - 329 340 - 383
2	153	0.31	174 - 295 302 - 320 322 - 323 330 - 339

Sequence

`________________________________________________________________________________________________________________________` `1h0k(A) : MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPINPSDINQIQGVYPSKPAKTTGFGTAEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDD` `:` `1n9g(A) : MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPINPSDINQIQGVYPSKPAKTTGFGTAEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDD` `________________________________________________________________________________________________________________________` `____________________________173_________________________________________________________________________________________` `1h0k(A) : FIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSKEFGPTIKEWIK` `:` `1n9g(A) : FIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSKEFGPTIKEWIK` `____________________________173_________________________________________________________________________________________` `______________________________295______________________320______329_______339___________________________________________` `1h0k(A) : QSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQ` `:` `1n9g(A) : QSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQ` `______________________________295______________________320______329_______339___________________________________________` `____` `1h0k(A) : LITY` `:` `1n9g(A) : LITY` `____`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.

Show console

play backwards

pause

play forwards

Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	2.9
Translation (A)	0.0
Closure (%)	88.6
Bending Residues ( green )	173 - 174 295 - 303 320 - 324 329 - 330 339 - 340
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file