Dipeptidyl-Peptidase 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dipeptidyl-Peptidase 3
  Conformer 1
(PDB)
3fvy (A)
  Conformer 2
(PDB)
5egy (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 425 0.8   7 - 334   375 - 419   669 - 724
2 289 1.3   335 - 374   420 - 668

Sequence


           ________________________________________________________________________________________________________________________ 
 3fvy(A) : **QYILPNDIGVSSLDCREAFRLLSPTERLYAYHLSRAAWYGGLAVLLQTSPEAPYIYALLSRLFRAQDPDQLHQHALAEGLTEEEYQAFLVYAAGVYSNMGNYKSFGDTKFVPNLPKEK 
         :                                                                                                                          
 5egy(A) : DTQYILPNDIGVSSLDSREAFRLLSPTERLYAYHLSRAAWYGGLAVLLQTSPEAPYIYALLSRLFRAQDPDQLRQHALAEGLTEEEYQAFLVYAAGVYSNMGNYKSFGDTKFVPNLPKEK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3fvy(A) : LERVILGSEAAQQHPEEVRGLWQTCGELMFSLEPRLRHLGLGKEGITTYFSGNCTMEDAKLAQDFLDSQNLSAYNTRLFKEVDGEGKPYYEVRLASVLGSE----sEVTSKLKSYEFRGS 
         :                                                                                                                          
 5egy(A) : LERVILGSEAAQQHPEEVRGLWQTCGELMFSLEPRLRHLGLGKEGITTYFSGNCTMEDAKLAQDFLDSQNLSAYNTRLFKEVDGCGKPYYEVRLASVLGSEPSLDSEVTSKLKSYEFRGS 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________334____________________________ 
 3fvy(A) : PFQVTRGDYAPILQKVVEQLEKAKAYAANSHQGQMLAQYIESFTQGSIEAHKRGSRFWIQDKGPIVESYIGFIESYRDPFGSRGEFEGFVAVVNKAMSAKFERLVASAEQLLKELPWPPT 
         :                                                                                                                          
 5egy(A) : PFQVTRGDYAPILQKVVEQLEKAKAYAANSHQGQMLAQYIESFTQGSIEAHKRGSRFWIQDKGPIVESYIGFIESYRDPFGSRGEFEGFVAVVNKAMSAKFERLVASAEQLLKELPWPPT 
           _________________________________________________________________________________________334____________________________ 

           _366______________________________________________415___________________________________________________________________ 
 3fvy(A) : FEKDKFLTPDFTSLDVLTFAGSGIPAGINIPNYDDLRQTEGFKNVSLGNVLAVAYATQREKLTFLEEDDKDLYILWKGPSFDVQVGLHELLGHGSGKLFVQDEKGAFNFDQETVINPETG 
         :                                                                                                                          
 5egy(A) : FEKDKFLTPDFTSLDVLTFAGSGIPAGINIPNYDDLRQTEGFKNVSLGNVLAVAYATQREKLTFLEEDDKDLYILWKGPSFDVQVGLHALLGHGSGKLFVQDEKGAFNFDQETVINPETG 
           _366______________________________________________415___________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3fvy(A) : EQIQSWYRSGETWDSKFSTIASSYEECRAESVGLYLCLHPQVLEIFGFEGADAEDVIYVNWLNMVRAGLLALEFYTPEAFNWRQAHMQARFVILRVLLEAGEGLVTITPTTGSDGRPDAR 
         :                                                                                                                          
 5egy(A) : EQIQSWYRCGETWDSKFSTIASSYEECRAESVGLYLSLHPQVLEIFGFEGADAEDVIYVNWLNMVRAGLLALEFYTPEAFNWRQAHMQARFVILRVLLEAGEGLVTITPTTGSDGRPDAR 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________665_________________________________________________________ 
 3fvy(A) : VRLDRSKIRSVGKPALERFLRRLQVLKSTGDVAGGRALYEGYATVTDAPPECFLTLRDTVLLRKESRKLIVQPNTRLEGSDVQLLEYEASAAGLIRSFSERFPEDGPELEEILTQLATAD 
         :                                                                                                                          
 5egy(A) : VRLDRSKIRSVGKPALERFLRRLQVLKSTGDVAGGRALYEGYATVTDAPPESFLTLRDTVLLRKESRKLIVQPNTRLEGSDVQLLEYEASAAGLIRSFSERFPEDGPELEEILTQLATAD 
           ____________________________________________________________665_________________________________________________________ 

           ____                                                                                                                     
 3fvy(A) : ARFW                                                                                                                     
         :                                                                                                                          
 5egy(A) : ARFW                                                                                                                     
           ____                                                                                                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
58.0
Translation
(A)
-2.5
Closure
(%)
100.0
Bending Residues
( green )
  334 - 340
  366 - 376
  415 - 420
  665 - 669
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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