4-Hydroxy-Tetrahydrodipicolinate Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 4-Hydroxy-Tetrahydrodipicolinate Reductase
  Conformer 1
(PDB)
5tej (A)
  Conformer 2
(PDB)
5tej (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 152 0.34   3 - 126   238 - 265
2 113 0.45   127 - 237   266 - 267

Sequence


           ________________________________________________________________________________________________________________________ 
 5tej(A) : MVRIAVAGAAGRMGRNLVKAAHHNPVAKVAAGSERPESSLVGVDLGELCGEGKFDVVVCDDLAKQIDQFDVIIDFTAPASTLNNLALCQQYGKSIVIGTTGFTEEQREQIDLVAQQVPVV 
         :                                                                                                                          
 5tej(B) : MVRIAVAGAAGRMGRNLVKAAHHNPVAKVAAGSERPESSLVGVDLGELCGEGKFDVVVCDDLAKQIDQFDVIIDFTAPASTLNNLALCQQYGKSIVIGTTGFTEEQREQIDLVAQQVPVV 
           ________________________________________________________________________________________________________________________ 

           123_____________________________________________________________________________________________________________235_____ 
 5tej(A) : MAPNYSVGVNLVFKLLEKAAKVMGDYCDIEIVEAHHRHKVDAPSGTAIGMGEAIAGAMGNKLSDVAVYAREGITGERTKDEIGFATIRAGDIVGEHTAMFADIGERVEITHKATDRMTFA 
         :                                                                                                                          
 5tej(B) : MAPNYSVGVNLVFKLLEKAAKVMGDYCDIEIVEAHHRHKVDAPSGTAIGMGEAIAGAMGNKLSDVAVYAREGITGERTKDEIGFATIRAGDIVGEHTAMFADIGERVEITHKATDRMTFA 
           123_____________________________________________________________________________________________________________235_____ 

           ______________________265____                                                                                            
 5tej(A) : NGAVKAAVWLHEKPAGFYTMTDVLGLNDL                                                                                            
         :                                                                                                                          
 5tej(B) : NGAVKAAVWLHEKPAGFYTMTDVLGLNDL                                                                                            
           ______________________265____                                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
28.0
Translation
(A)
1.4
Closure
(%)
90.6
Bending Residues
( green )
  123 - 129
  235 - 240
  265 - 267
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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