4-Hydroxy-Tetrahydrodipicolinate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 4-Hydroxy-Tetrahydrodipicolinate Synthase
  Conformer 1
(PDB)
4ly8 (A)
  Conformer 2
(PDB)
4m19 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 133 0.28   5 - 5   10 - 78   100 - 100   210 - 221   247 - 296
2 129 0.31   6 - 9   79 - 95   101 - 209
3 25 0.28   222 - 246

Sequence


           ____5___9___________________________________________________________________78____________92____________________________ 
 4ly8(A) : MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLY 
         :                                                                                                                          
 4m19(A) : **KNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLY 
           ____5___9___________________________________________________________________78____________92____________________________ 

           _____________________________________________________________________________________209_________221____________________ 
 4ly8(A) : EHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVeASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMISALTHFALDENYKEAKKINDELY 
         :                                                                                                                          
 4m19(A) : EHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVeASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMISALTHFALDENYKEAKKINDELY 
           _____________________________________________________________________________________209_________221____________________ 

           __246____________________________________________________                                                                
 4ly8(A) : NINKILFCESNPIPIKTAMYLAGLIESLEFRLPLCSPSKENFAKIEEVMKKYKIKGF                                                                
         :                                                                                                                          
 4m19(A) : NINKILFCESNPIPIKTAMYLAGLIESLEFRLPLCSPSKENFAKIEEVMKKYKIKGF                                                                
           __246____________________________________________________                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.5
Translation
(A)
-0.2
Closure
(%)
34.0
Bending Residues
( green )
  5 - 6
  9 - 10
  78 - 79
  92 - 101
  209 - 210
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
5.0
Translation
(A)
0.2
Closure
(%)
20.2
Bending Residues
( green )
  221 - 222
  246 - 248
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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