2-Methylcitrate Synthase, Mitochondrial

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 2-Methylcitrate Synthase, Mitochondrial
  Conformer 1
(PDB)
5uqo (A)
  Conformer 2
(PDB)
6bol (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 394 0.4   33 - 315   319 - 320   335 - 336   348 - 390   399 - 462
2 36 0.65   316 - 318   321 - 334   337 - 347   391 - 398

Sequence


           ________________________________________________________________________________________________________________________ 
 5uqo(A) : AEPDLKTALKAVIPAKRELFKQVKERSDEVIGEVKVANVIGGMRGLKSMLWEGSVLDPEEGIRFHGKTIKDCQKELPKGTSGTEMLPEAMFWLLLTGQVPSTNQVRAFSRELAEQSHLPQ 
         :                                                                                                                          
 6bol(B) : AEPDLKTALKAVIPAKRELFKQVKERSDEVIGEVKVANVIGGMRGLKSMLWEGSVLDPEEGIRFHGKTIKDCQKELPKGTSGTEMLPEAMFWLLLTGQVPSTNQVRAFSRELAEQSHLPQ 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5uqo(A) : HILDLIKSFPRSMHPMTQLSIAVAALNTESKFAKAYEKGLSKADYWEPTFDDSISLLAKIPRVAALVFRPDEVDQVGTQALDASQDWSYNFAELLGKGGKENQDFHDLLRLYLALHGDHE 
         :                                                                                                                          
 6bol(B) : HILDLIKSFPRSMHPMTQLSIAVAALNTESKFAKAYEKGLSKADYWEPTFDDSISLLAKIPRVAALVFRPDEVDQVGTQALDASQDWSYNFAELLGKGGKENQDFHDLLRLYLALHGDHE 
           ________________________________________________________________________________________________________________________ 

           __________________________________________315________________334__________347________________________________________390 
 5uqo(A) : GGNVSAHATHLVGSALSDPFLSYSAGLLGLAGPLHGLAAQEVLRWILAMQDKIGTKFTDDDVRNYLWDTLKSGRVVPGYGHGVLRKPDPRFQALMDFAATRPDVLANPVFQLVKKNSEIA 
         :                                                                                                                          
 6bol(B) : GGNVSAHATHLVGSALSDPFLSYSAGLLGLAGPLHGLAAQEVLRWILAMQDKIGTKFTDDDVRNYLWDTLKSGRVVPGYGHGVLRKPDPRFQALMDFAATRPDVLANPVFQLVKKNSEIA 
           __________________________________________315________________334__________347________________________________________390 

           _____398__________________________________________________________________                                               
 5uqo(A) : PAVLTEHGKTKNPHPNVDAASGVLFYHYGFQQPLYYTVTFGVSRALGPLVQLIWDRALGLPIERPKSINLLGLK                                               
         :                                                                                                                          
 6bol(B) : PAVLTEHGKTKNPHPNVDAASGVLFYHYAFQQPLYYTVTFGVSRALGPLVQLIWDRALGLPIERPKSINLLGLK                                               
           _____398__________________________________________________________________                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.1
Translation
(A)
0.3
Closure
(%)
70.6
Bending Residues
( green )
  315 - 316
  318 - 321
  334 - 337
  347 - 348
  390 - 391
  398 - 399
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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