2-Methylcitrate Synthase, Mitochondrial

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 2-Methylcitrate Synthase, Mitochondrial
  Conformer 1
(PDB)
5uqo (A)
  Conformer 2
(PDB)
5uqr (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 313 0.5   33 - 83   94 - 305   351 - 351   360 - 360   415 - 462
2 117 0.87   84 - 93   306 - 350   352 - 359   361 - 414

Sequence


           ___________________________________________________83________93_________________________________________________________ 
 5uqo(A) : AEPDLKTALKAVIPAKRELFKQVKERSDEVIGEVKVANVIGGMRGLKSMLWEGSVLDPEEGIRFHGKTIKDCQKELPKGTSGTEMLPEAMFWLLLTGQVPSTNQVRAFSRELAEQSHLPQ 
         :                                                                                                                          
 5uqr(B) : AEPDLKTALKAVIPAKRELFKQVKERSDEVIGEVKVANVIGGMRGLKSMLWEGSVLDPEEGIRFHGKTIKDCQKELPKGTSGTEMLPEAMFWLLLTGQVPSTNQVRAFSRELAEQSHLPQ 
           ___________________________________________________83________93_________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5uqo(A) : HILDLIKSFPRSMHPMTQLSIAVAALNTESKFAKAYEKGLSKADYWEPTFDDSISLLAKIPRVAALVFRPDEVDQVGTQALDASQDWSYNFAELLGKGGKENQDFHDLLRLYLALHGDHE 
         :                                                                                                                          
 5uqr(B) : HILDLIKSFPRSMHPMTQLSIAVAALNTESKFAKAYEKGLSKADYWEPTFDDSISLLAKIPRVAALVFRPDEVDQVGTQALDASQDWSYNFAELLGKGGKENQDFHDLLRLYLALHGDHE 
           ________________________________________________________________________________________________________________________ 

           _______________________________304___________________________________________350________________________________________ 
 5uqo(A) : GGNVSAHATHLVGSALSDPFLSYSAGLLGLAGPLHGLAAQEVLRWILAMQDKIGTKFTDDDVRNYLWDTLKSGRVVPGYGHGVLRKPDPRFQALMDFAATRPDVLANPVFQLVKKNSEIA 
         :                                                                                                                          
 5uqr(B) : GGNVSAHATHLVGSALSDPFLSYSAGLLGLAGPLHGLAAQEVLRWILAMQDKIGTKFTDDDVRNYLWDTLKSGRVVPGYGHGVLRKPDPRFQALMDFAATRPDVLANPVFQLVKKNSEIA 
           _______________________________304___________________________________________350________________________________________ 

           _____________________414___________________________________________________                                              
 5uqo(A) : PAVLTEHGKTKNPHPNVDAASGVLFYHYGFQQPLYYTVTFGVSRALGPLVQLIWDRALGLPIERPKSINLLGLK*                                              
         :                                                                                                                          
 5uqr(B) : PAVLTEHGKTKNPHPNVDAASGVLFYHYGFQQPLYYTVTFGVSRALGPLVQLIWDRALGLPIERPKSINLLGLKK                                              
           _____________________414___________________________________________________                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.0
Translation
(A)
0.2
Closure
(%)
81.2
Bending Residues
( green )
  83 - 84
  93 - 101
  304 - 308
  350 - 361
  414 - 419
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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