3-Phosphoglycerate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Phosphoglycerate Kinase
  Conformer 1
(PDB)
13pk (A)
  Conformer 2
(PDB)
1vjd (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 204 3.23   7 - 203   226 - 227   396 - 417
2 189 1.72   204 - 225   228 - 395

Sequence


           ________________________________________________________________________________________________________________________ 
 13pk(A) : ***EKKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGG-SCVLMSHLGRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCLNAADVV 
         :                                                                                                                          
 1vjd(A) : SLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAIPSIKFCLDNGAKSVVLMSHLGRPDGIPM------------P---DKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEK 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________203___________________225__ 
 13pk(A) : SKMSP--GDVVLLENVRFYKEE--------GSKKAKDR---EAMAKILASYGDVYISDAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLL 
         :                                                                                                                          
 1vjd(A) : ACADPAAGSVILLENLRFHVEEEGKGKDASGSKVKADPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN--LPKKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLI 
           _____________________________________________________________________________________________199___________________221__ 

           ________________________________________________________________________________________________________________________ 
 13pk(A) : DNMLQRIDYLLIGGAMAYTFLKA-QGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEF-KAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFE 
         :                                                                                                                          
 1vjd(A) : NNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGSKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYSEAVARAKQIVWNGPVGVFE 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________395________________________                                               
 13pk(A) : MVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLDDK                                               
         :                                                                                                                          
 1vjd(A) : WEAFAQGTKALMDEVVKATSR-GCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNV                                               
           _______________________________________________392________________________                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
28.0
Translation
(A)
-1.8
Closure
(%)
85.8
Bending Residues
( green )
  203 - 205
  225 - 228
  395 - 396
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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