2-Succinylbenzoate--Coa Ligase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 2-Succinylbenzoate--Coa Ligase
  Conformer 1
(PDB)
5buq (A)
  Conformer 2
(PDB)
5buq (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 379 1.37   5 - 389   416 - 416
2 64 1.81   390 - 415   417 - 461

Sequence


           ________________________________________________________________________________________________________________________ 
 5buq(A) : LTEQPNWLMQRAQLTPERIALIYEDQTVTFAELFAASKRMAEQLAAHSVRKGDTAAILLQNRAEMVYAVHACFLLGVKAVLLNTKLSTHERLFQLEDSGSGFLLTDSSFEKKEYEHIVQT 
         :                                                                                                                          
 5buq(B) : *TEQPNWLMQRAQLTPERIALIYEDQTVTFAELFAASKRMAEQLAAHSVRKGDTAAILLQNRAEMVYAVHACFLLGVKAVLLNTKLSTHERLFQLEDSGSGFLLTDSSFEKKEYEHIVQT 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5buq(A) : IDVDELMKEAAEEIEIEAYMQMDATATLMYTSkPKGVQQTFGNHYFSAVSSALNLGITEQDRWLIALPLFHISGLSALFKSVIYGMTVVLHQRFSVSDVLHSINRHEVTMISAVQTMLAS 
         :                                                                                                                          
 5buq(B) : IDVDELMKEAAEEIEIEAYMQMDATATLMYTSkPKGVQQTFGNHYFSAVSSALNLGITEQDRWLIALPLFHISGLSALFKSVIYGMTVVLHQRFSVSDVLHSINRHEVTMISAVQTMLAS 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5buq(A) : LLEETNRCPESIRCILLGGGPAPLPLLEECREKGFPVFQSYGMTETCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGQVCEPYEHGEIMVKGPNVMKSYFNRESANEASFQNGWLKT 
         :                                                                                                                          
 5buq(B) : LLEETNRCPESIRCILLGGGPAPLPLLEECREKGFPVFQSYGMTETCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGQVCEPYEHGEIMVKGPNVMKSYFNRESANEASFQNGWLKT 
           ________________________________________________________________________________________________________________________ 

           _____________381____________________________412_________________________________________________________________________ 
 5buq(A) : GDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPA-aEAGVSGAEDKKgKVPHAYL--hKPVSAGELTDYCKERLAKYKIPAKFFVLDR*********************** 
         :                                                                                                                          
 5buq(B) : GDLGYLDNEGFLYVLD---dLIISGGENIYPAEVESVLLSHPAVAEAGVSGAEDk---VPHAYLVLHKPVSAGELTDYCKERLAKYKIPAKFFVLDRLPRNASNKLLRNQLKDARKGELL 
           _____________381____________________________412_________________________________________________________________________ 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
87.5
Translation
(A)
-2.2
Closure
(%)
87.2
Bending Residues
( green )
  381 - 390
  412 - 420
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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