Beta-Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Actin
  Conformer 1
(PDB)
1nwk (A)
  Conformer 2
(PDB)
3mfp (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 127 0.61   8 - 33   72 - 144   337 - 365
2 26 1.48   34 - 71
3 192 0.95   145 - 336

Sequence


           _______________________________33____________________________________71_________________________________________________ 
 1nwk(A) : *****TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR------------sYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 
         :                                                                                                                          
 3mfp(A) : DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 
           _______________________________33____________________________________71_________________________________________________ 

           ____________________144_________________________________________________________________________________________________ 
 1nwk(A) : IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 
         :                                                                                                                          
 3mfp(A) : IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 
           ____________________144_________________________________________________________________________________________________ 

           ____________________________________________________________________________________________336_________________________ 
 1nwk(A) : LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQE 
         :                                                                                                                          
 3mfp(A) : LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQE 
           ____________________________________________________________________________________________336_________________________ 

           ______________                                                                                                           
 1nwk(A) : YDEAGPSIVH****                                                                                                           
         :                                                                                                                          
 3mfp(A) : YDEAGPSIVHRKCF                                                                                                           
           ______________                                                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
21.9
Translation
(A)
-0.2
Closure
(%)
97.2
Bending Residues
( green )
  33 - 34
  71 - 76
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
14.4
Translation
(A)
1.5
Closure
(%)
17.9
Bending Residues
( green )
  144 - 149
  336 - 337
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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