Beta-Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Actin
  Conformer 1
(PDB)
1j6z (A)
  Conformer 2
(PDB)
4b1v (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 173 1.0   152 - 163   170 - 292   297 - 321   326 - 338
2 171 1.02   8 - 151   164 - 169   293 - 296   322 - 325   339 - 370

Sequence


           ________________________________________________________________________________________________________________________ 
 1j6z(A) : ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 
         :                                                                                                                          
 4b1v(A) : **TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGR--------------sYVGDEAQS----lTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 
           ________________________________________________________________________________________________________________________ 

           _________________________151_________163___169__________________________________________________________________________ 
 1j6z(A) : FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP 
         :                                                                                                                          
 4b1v(A) : FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP 
           _________________________151_________163___169__________________________________________________________________________ 

           ______________________________________________292_296______________________321_325__________338_________________________ 
 1j6z(A) : DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYD 
         :                                                                                                                          
 4b1v(A) : DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYD 
           ______________________________________________292_296______________________321_325__________338_________________________ 

           ____________                                                                                                             
 1j6z(A) : EAGPSIVHR***                                                                                                             
         :                                                                                                                          
 4b1v(A) : EAGPSIVHRKCF                                                                                                             
           ____________                                                                                                             

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.0
Translation
(A)
0.2
Closure
(%)
36.1
Bending Residues
( green )
  151 - 152
  163 - 164
  169 - 170
  292 - 293
  296 - 297
  321 - 322
  325 - 326
  338 - 339
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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