Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylate Kinase
  Conformer 1
(PDB)
1nks (A)
  Conformer 2
(PDB)
1nks (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 28 0.87   36 - 38   68 - 87   109 - 113
2 133 0.7   3 - 35   88 - 108   114 - 192
3 29 0.57   39 - 67

Sequence


           _________________________________35_38___________________________67__________________87__________________108__113_______ 
 1nks(A) : MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIF 
         :                                                                                                                          
 1nks(C) : MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIF 
           _________________________________35_38___________________________67__________________87__________________108__113_______ 

           __________________________________________________________________________                                               
 1nks(A) : LLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSMK                                               
         :                                                                                                                          
 1nks(C) : LLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSMK                                               
           __________________________________________________________________________                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.6
Translation
(A)
-0.4
Closure
(%)
99.7
Bending Residues
( green )
  35 - 36
  87 - 88
  108 - 109
  113 - 114
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
19.1
Translation
(A)
-0.6
Closure
(%)
92.9
Bending Residues
( green )
  38 - 40
  67 - 68
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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