Amino Acid/amide Abc Transporter Substrate-Binding Protein, Haat Family

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Amino Acid/amide Abc Transporter Substrate-Binding Protein, Haat Family
  Conformer 1
(PDB)
4nqr (A)
  Conformer 2
(PDB)
4rdc (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 328 0.53   60 - 344   366 - 409
2 21 0.56   345 - 365

Sequence


           ________________________________________________________________________________________________________________________ 
 4nqr(A) : NTIPIGIALAQTSNVALLGQEQVAGAKIAEKYFNDKGGVNGTPIKLIFQDTAGDEAGTINAFQTLINKDKVVGIVGPTLSQQAFSANPIAERAKVPVVGPSNTAKGIPEIGDYVARVSAP 
         :                                                                                                                          
 4rdc(A) : NTIPIGIALAQTSNVALLGQEQVAGAKIAEKYFNDKGGVNGTPIKLIFQDTAGDEAGTINAFQTLINKDKVVGIVGPTLSQQAFSANPIAERAKVPVVGPSNTAKGIPEIGDYVARVSAP 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4nqr(A) : VSVVAPNSVKAALKQNPNIKKVAVFFAQNDAFSKSETEIFQQTVKDQGLELVTVQKFQTTDTDFQSQATNAINLKPDLVIISGLAADGGNLVRQLRELGYQGAIIGGDGLNTSNVFAVCK 
         :                                                                                                                          
 4rdc(A) : VSVVAPNSVKAALKQNPNIKKVAVFFAQNDAFSKSETEIFQQTVKDQGLELVTVQKFQTTDTDFQSQATNAINLKPDLVIISGLAADGGNLVRQLRELGYQGAIIGGDGLNTSNVFAVCK 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________344__________________365_______________________________________________ 
 4nqr(A) : ALCDGVLIAQAYSPEYTGEINKAFRQAYVDQYKKEPPQFSAQAFAAVQVYVESLKALDTKNKVSKIQLPELRTELNKQLLTGKYNTPLGEISFTPIGEVVQKDFYVAQIKeKDGSQGKFT 
         :                                                                                                                          
 4rdc(A) : ALCDGVLIAQAYSPEYTGEINKAFRQAYVDQYKKEPPQFSAQAFAAVQVYVESLKALDTKNKVSKIQLPELRTELNKQLLTGKYNTPLGEISFTPIGEVVQKDFYVAQIKeKDGSQGKFT 
           _________________________________________________344__________________365_______________________________________________ 

           ___                                                                                                                      
 4nqr(A) : FLK                                                                                                                      
         :                                                                                                                          
 4rdc(A) : FLK                                                                                                                      
           ___                                                                                                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.1
Translation
(A)
0.7
Closure
(%)
99.2
Bending Residues
( green )
  344 - 346
  365 - 366
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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