Aspartate Aminotransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartate Aminotransferase
  Conformer 1
(PDB)
1art (A)
  Conformer 2
(PDB)
1asn (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 298 0.36   35 - 35   40 - 336   353 - 355   357 - 360   387 - 387
2 84 0.81   17 - 34   36 - 39   337 - 352   356 - 356   361 - 386   388 - 406

Sequence


           ____________________________34__________________________________________________________________________________________ 
 1art(A) : MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSV 
         :                                                                                                                          
 1asn(B) : MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSV 
           ____________________________34__________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1art(A) : KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV 
         :                                                                                                                          
 1asn(B) : KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________336_____________352____________________ 
 1art(A) : ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLR 
         :                                                                                                                          
 1asn(B) : ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLR 
           _________________________________________________________________________________336_____________352____________________ 

           ___________386______________________                                                                                     
 1art(A) : LREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL                                                                                     
         :                                                                                                                          
 1asn(B) : LREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL                                                                                     
           ___________386______________________                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.7
Translation
(A)
-0.3
Closure
(%)
99.0
Bending Residues
( green )
  34 - 42
  336 - 337
  352 - 353
  355 - 361
  386 - 388
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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