Aspartate Aminotransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartate Aminotransferase
  Conformer 1
(PDB)
1arg (A)
  Conformer 2
(PDB)
9aat (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 287 1.18   40 - 330   357 - 360
2 95 1.09   17 - 39   331 - 356   361 - 407

Sequence


           ___________________________________39___________________________________________________________________________________ 
 1arg(A) : **MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNT 
         :                                                                                                                          
 9aat(A) : SSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF 
           ___________________________________39___________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1arg(A) : SVKR-VWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHK 
         :                                                                                                                          
 9aat(A) : KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________330_______________________356_360________ 
 1arg(A) : ELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKE 
         :                                                                                                                          
 9aat(A) : DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPE 
           _______________________________________________________________________________330_______________________356_360________ 

           _________________________________________                                                                                
 1arg(A) : QVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL*                                                                                
         :                                                                                                                          
 9aat(A) : QVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVTK                                                                                
           _________________________________________                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.5
Translation
(A)
-0.4
Closure
(%)
99.7
Bending Residues
( green )
  39 - 40
  330 - 331
  356 - 357
  360 - 361
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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